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You can pay Central Excise Duties and Service Tax to Central Board of Excise and Customs (CBEC), through Axis Bank

Indirect Tax Payment - List of Commissionerates

Axis Bank is authorised for collection of indirect tax payment on behalf of Central Board of Excise and Customs (CBEC) w.e.f 15 November, 2003. You can make your indirect tax payment online, or physically at any of Axis Bank's authorised Branches. You can find below the list of commissionerates in Mumbai, Delhi, Bangalore and Hyderabad where Axis Bank branches are authorized to collect Central Excise Duty and Service Tax.